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Two key obstacles in biomedical relation extraction (RE) are the scarcity of annotations and the prevalence of instances without explicitly pre-defined labels due to low annotation coverage. Existing approaches, which treat biomedical RE as a multi-class classification task, often result in poor generalization in low-resource settings and do not have the ability to make selective prediction on unknown cases but give a guess from seen relations, hindering the applicability of those approaches. We present NBR, which converts biomedical RE as natural language inference formulation through indirect supervision. By converting relations to natural language hypotheses, NBR is capable of exploiting semantic cues to alleviate annotation scarcity. By incorporating a ranking-based loss that implicitly calibrates abstinent instances, NBR learns a clearer decision boundary and is instructed to abstain on uncertain instances. Extensive experiments on three widely-used biomedical RE benchmarks, namely ChemProt, DDI and GAD, verify the effectiveness of NBR in both full-set and low-resource regimes. Our analysis demonstrates that indirect supervision benefits biomedical RE even when a domain gap exists, and combining NLI knowledge with biomedical knowledge leads to the best performance gains. 

Recently there is an increasing scholarly interest in time-varying knowledge graphs, or temporal knowledge graphs (TKG). Previous research suggests diverse approaches to TKG reasoning that uses historical information. However, less attention has been given to the hierarchies within such information at different timestamps. Given that TKG is a sequence of knowledge graphs based on time, the chronology in the sequence derives hierarchies between the graphs. Furthermore, each knowledge graph has its hierarchical level which may differ from one another. To address these hierarchical characteristics in TKG, we propose HyperVC, which utilizes hyperbolic space that better encodes the hierarchies than Euclidean space. The chronological hierarchies between knowledge graphs at different timestamps are represented by embedding the knowledge graphs as vectors in a common hyperbolic space. Additionally, diverse hierarchical levels of knowledge graphs are represented by adjusting the curvatures of hyperbolic embeddings of their entities and relations. Experiments on four benchmark datasets show substantial improvements, especially on the datasets with higher hierarchical levels. 

Relation extraction (RE) models have been challenged by their reliance on training data with expensive annotations. Considering that summarization tasks aim at acquiring concise expressions of synoptical information from the longer context, these tasks naturally align with the objective of RE, i.e., extracting a kind of synoptical information that describes the relation of entity mentions. We present SuRE, which converts RE into a summarization formulation. SuRE leads to more precise and resource-efficient RE based on indirect supervision from summarization tasks. To achieve this goal, we develop sentence and relation conversion techniques that essentially bridge the formulation of summarization and RE tasks. We also incorporate constraint decoding techniques with Trie scoring to further enhance summarization-based RE with robust inference. Experiments on three RE datasets demonstrate the effectiveness of SuRE in both full-dataset and low-resource settings, showing that summarization is a promising source of indirect supervision signals to improve RE models.